【問題】Stringtie github ?推薦回答
關於「Stringtie github」標籤,搜尋引擎有相關的訊息討論:
gpertea/stringtie: Transcript assembly and quantification for RNA-Seq。
Building the latest version from the repository. In order to compile the StringTie source in this GitHub repository the following steps can be taken: git clone ...: 。
skovaka/stringtie2: Transcript assembly and quantification ... - GitHub。
Obtaining and installing StringTie. In order to build StringTie from this GitHub repository the following steps can be taken: git clone https://github.com/ ...: 。
Transposable element sequence fragments incorporated into coding ...。
2021年8月14日 · StringTie (37) was used to assemble the transcripts from the merged aligned reads, guided by the GENCODE v32 annotations.。
a novel pooling approach for discovering intergenic transcripts from ...。
2020年9月21日 · StringTie, a more recent method, improved prediction accuracy and led to ... are available at GitHub (https://github.com/pliu55/PRAM_paper).。
Analysis and comprehensive comparison of PacBio and nanopore ...。
2020年6月12日 · Among them, 5,682,227, 5,563,209, and 5,207,164 FL reads were obtained ... For Illumina sequencing, HISAT2 and StringTie were used for reads ...。
Transcriptome assembly from long-read RNA-seq alignments with ...。
2019年12月16日 · StringTie and other transcriptome assemblers estimate transcript abundance ... (blue) and FLAIR (magenta) on real PacBio (FL = full length, ...。
Single-cell RNA-seq reveals hidden transcriptional variation ... - eLife。
2018年3月27日 · We then looked for Stringtie transcript features overlapping each mRNA ... released code (https://github.com/KafsackLab/scRNAseq-Malaria).。
CircAST: Full-length Assembly and Quantification of Alternatively ...。
CircAST can be accessed freely at https://github.com/xiaofengsong/CircAST. ... StringTie enables improved reconstruction of a transcriptome from RNA-seq ...。
CIRCexplorer pipelines for circRNA annotation and quantification ...。
2021年2月12日 · CIRCexplorer, TopHat/STAR, https://github.com/YangLab/ ... The StringTie [57] can be downloaded from https://ccb.jhu.edu/software/stringtie, ...。
[PDF] Alternative splicing detection across different tissues in cork oak。
genome, and Cufflinks and StringTie for transcript assembly. STAR ... pared to original genome annotation using gffcompare utility (https://github.
常見Stringtie github問答
延伸文章資訊StringTie enables improved reconstruction of a transcriptome from. RNA-seq reads. Nat Biotech. 20...
Article “StringTie enables improved reconstruction of a transcriptome from RNA-seq reads” Detaile...
"StringTie enables improved reconstruction of a transcriptome from RNA-seq reads." Nature biotech...
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat Biotechnol. ...
M. Pertea, G. M. Pertea, and C. M. Antonescu, StringTie enables improved reconstruction of a tran...
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat. Biotechnol....
Firstly, for each accession, RNA-seq reads were mapped on the sorghum genome assembly Sbicolor_31...
StringTie is a fast and highly efficient assembler of RNA-Seq alignments ... StringTie enables im...
StringTie enables improved reconstruction of a transcriptome from. RNA-seq reads. Nat Biotech. 20...
Article “StringTie enables improved reconstruction of a transcriptome from RNA-seq reads” Detaile...
"StringTie enables improved reconstruction of a transcriptome from RNA-seq reads." Nature biotech...
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat Biotechnol. ...
M. Pertea, G. M. Pertea, and C. M. Antonescu, StringTie enables improved reconstruction of a tran...
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat. Biotechnol....
Firstly, for each accession, RNA-seq reads were mapped on the sorghum genome assembly Sbicolor_31...
StringTie is a fast and highly efficient assembler of RNA-Seq alignments ... StringTie enables im...